Refereed Journal Papers

Last Update: July 27, 2019

Bold-text author names are OMNI group members.

2019

J72. S. K. Mirsky and N. T. Shaked, “First experimental realization of six-pack holography and its application to dynamic synthetic aperture superresolution,” Accepted to Optics Express, 2019 [PDF, Video 1Video 2Video 3].
J71. M. Rubin, O. Stein, N. A. Turko, Y. Nygate, D. Roitshtain, L. Karako, I. Barnea, R. Giryes, and N. T. Shaked, “TOP-GAN: Stain-free cancer cell classification using deep learning with a small training set,” Accepted to Medical Image Analysis, 2019 [Link].
J70. G. Dardlkman and N. T. Shaked, “Is multiplexed off-axis holography for quantitative phase imaging more spatial bandwidth-efficient than on-axis holography?,” Journal of Optical Society of America A, Vol. 36, No. 2, pp. A1-11, 2019 [PDF] [Link].

2018

J69. N. Rotman-Nativ, N. A. Turko, and N. T. Shaked, “Flipping interferometry with doubled imaging area,” Optics Letters, Vol. 43, Issue 22, pp. 5542-5545, 2018 [PDF, Video 1, Video 2, Video 3].
J68. I. Barnea, L. Karako, S. K. Mirsky, M. Levi, M. Balberg, and N. T. Shaked, “Stain-free interferometric phase microscopy correlation with DNA fragmentation stain in human spermatozoa,” Journal of Biophotonics, Vol. 11, e201800137, pp.1-10, 2018 [Link].
J67. Y. Nygate, G. Singh, N. A. Turko, and N. T. Shaked, “Simultaneous off-axis multiplexed holography and regular fluorescence microscopy of biological cells,” Optics Letters, Vol. 43, No. 1, pp. 2587-2590, 2018 [PDF, Video 1] [Link].
J66. L. Wolbromsky, N. A. Turko, and N. T. Shaked, “Single-exposure full-field multi-depth imaging using low-coherence holographic multiplexing,” Optics Letters, Vol. 43, Issue 9, pp. 2046-2049, 2018 [PDF] [Link].
J65. A. Nativ, H. Feldman, and N. T. Shaked, “Wafer defect detection by polarization insensitive external differential interference contrast module,” Applied Optics, Vol. 57, No. 13, pp. 3534-3538, 2018 [PDF] [Link].
J64. N. A. Turko, P. Jacob Eravuchira, I. Barnea, and N. T. Shaked, “Simultaneous three-wavelength unwrapping using external digital holographic multiplexing module,” Optics Letters, Vol. 43, Issue 9, pp. 1943-1946, 2018 [PDF] [Link].
J63. G. Dardikman, Y. N. Nygate, I. Barnea, N. A. Turko, G. Singh, B. Javidi, and N. T. Shaked, “Integral refractive index imaging of flowing cell nuclei using quantitative phase microscopy combined with fluorescence microscopy,” Biomedical Optics Express, Vol. 9, Issue 3, pp. 1177-1189, 2018 [PDF, Video 1] [Link].
J62. G. Dardikman*, G. Singh*, and N. T. Shaked, “Four dimensional phase unwrapping of dynamic objects in digital holography,” Optics Express, Vol. 26, Issue 4, pp. 3772-3778, 2018 [PDF, Video 1, Video 2, Video 3, Video 4, Video 5, Video 6, Video 7, Video 8, Video 9, Video 10, Video 11, Video 12, Video 13, Video 14] [Link].
J61. P. Jacob Eravuchira, S. K. Mirsky, I. Barnea, M. Levi, M. Balberg, and N. T. Shaked, “Individual sperm selection by microfluidics integrated with interferometric phase microscopy,” Methods, Vol. 136, pp. 152-159, 2018. First Published online in September 2017 [Link].

2017

J60. G. Dardikman, N. A. Turko, N. Nativ, S. K. Mirsky, and N. T. Shaked, “Optimal spatial bandwidth capacity in multiplexed off-axis holography for rapid quantitative phase reconstruction and visualization,” Optics Express, Vol. 25, No. 26, pp. 33400-33415, 2017 [PDF] [Link] [Erratum].
J59. G. Dardikman and N. T. Shaked, “Review on methods of solving the refractive index-thickness coupling problem in digital holographic microscopy of biological cells,” Optics Communications, Vol. 422, pp. 8-16, 2017 [Link].
J58. M. Rubin, G. Dardikman, S. K. Mirsky, and N. T. Shaked, “Six-pack off-axis holography,” Optics Letters 42, Issue 22, pp. 4611-4614, 2017 [PDF] [Video 1, Video 2, Video 3 , Video 4] [Link].
J57. S. K. Mirsky, I. Barnea, M. Levi, H. Greenspan, and N. T. Shaked, “Automated analysis of individual sperm cells using stain-free interferometric phase microscopy and machine learning,” Cytometry Part A, Vol. 91, Issue 9, pp. 893-900, 2017 [Link].
J56. N. A. Turko, O. Blum, D. Roitshtain, B. Kemper, and N. T. Shaked, “Dynamic measurements of flowing cells labeled by gold nanoparticles using full-field photothermal interferometric imaging,”  Journal of Biomedical Optics, Vol. 22, No. 6, 066012, 2017 [PDF] [Link].
J55. D. Roitshtain, L. Wolbromsky, E. Bal, H. Greenspan, L. Satterwhite, and N. T. Shaked, “Quantitative phase microscopy spatial signatures of cancer cells,” Cytometry Part A, Vol. 91, Issue 5, pp. 482-493, 2017 [Link].
J54. A. Nativ and N. T. Shaked, “Compact interferometric module for full-field interferometric phase microscopy with low spatial coherence illumination,” Optics Letters, Vol. 42, Issue 8, pp. 1492-1495, 2017 [PDF].
J53. G. Dardikman, S. Mirsky, M. Habaza, Y. Roichman, and N. T. Shaked, “Angular phase unwrapping of optically thick objects with a thin dimension,” Optics Express, Vol. 25, Issue 4, pp. 3347-3357, 2017 [PDF] [Link].
J52. N. A. Turko and N. T. Shaked, “Simultaneous two-wavelength phase unwrapping using external module for multiplexing off-axis holography using external module for multiplexing off-axis holography,” Optics Letters, Vol. 42, Issue 1, pp. 73-76, 2017 [PDF] [Link].
J51. M. Balberg, M. Levi, K. Kalinowski, I. Barnea, S. Mirsky, and N. T. Shaked, “Localized measurements of physical parameters within human sperm cells obtained with wide-field interferometry,” Accepted to Journal of Biophotonics, Vol. 10, Issue 10, 1305-1314, 2017 [Link].

2016

J50. M. Habaza, M. Kirschbaum, C. Guernth-Marschner, G. Dardikman, I. Barnea, R. Korenstein, C. Duschl, and N. T. Shaked, “Rapid three-dimensional refractive-index imaging of live cells in suspension without labeling using dielectrophoretic cell rotation,” Advanced Science, 1600205: 1-9, 2016 [PDF] [Link] .
J49. S. Mirsky, I. Barnea, and N. T. Shaked, “Label-free quantitative imaging of sperm for in-vitro fertilization using interferometric phase microscopy,” Journal of Fertilization: In Vitro, IVF – Worldwide, Reproductive Medicine, Genetics & Stem Cell Biology, 2016 [PDF] [Link].
J48. G. Dardikman, M. Habaza, L. Waller, and N. T. Shaked, “Video-rate processing for tomographic phase microscopy of biological cells using CUDA,” Optics Express, Vol. 24, Issue 11, pp. 11839-11854, 2016 [PDF] [Link].
J47. D. Roitshtain, N. Turko, B. Javidi, and N. T. Shaked, “Flipping interferometry and its application for quantitative phase microscopy in a micro-channel,” Optics Letters, Vol. 41, Issue 10, pp. 2354-2357, 2016 [PDF] [Link] .
J46. O. Backoach, S. Kariv, P. Girshovitz, and N. T. Shaked, “Fast phase processing in off-axis holography by CUDA including parallel phase unwrapping,” Optics Express, Vol. 24, Issue 4, pp. 3177-3188, 2016 [PDF] [Link] .

2015

J45. P. Girshovitz, I. Frenklach, and N. T. Shaked, “Broadband quantitative phase microscopy with extended field of view using off-axis interferometric multiplexing,” Journal of Biomedical Optics, Vol. 20, No. 11, 111217: 1-6, 2015 [PDF] [Link] .
J44. O. Blum and N. T. Shaked, “Prediction of photothermal phase signatures from arbitrary plasmonic nanoparticles and experimental verification,” Nature – Light: Science and Applications (Nature LSA), Vol. 4, e322, pp. 1-8, 2015 [View].
J43. M. Haifler, P. Girshovitz, G. Band, G. Dardikman, I. Madjar, and N. T. Shaked, “Interferometric phase microscopy for label-free morphological evaluation of sperm cells,” Fertility and Sterility, Vol. 104, Issue 1, pp. 43-47, 2015 [View].
J42. S. Karepov, N. T. Shaked, and T. Ellenbogen, “Off-axis interferometer with adjustable fringe contrast based on polarization encoding,” Optics Letters, Vol. 40, Issue 10, pp. 2273-2276, 2015 [View].
J41. R. Friedman and N. T. Shaked, “Hybrid reflective interferometric system combining wide-field and single-point phase measurements,” IEEE Photonics Journal, Vol. 7, Number 3, 2015 [Link].
J40. M. Habaza, B. Gilboa, Y. Roichman, and N. T. Shaked, “Tomographic phase microscopy with 180° rotation of live cells in suspension by holographic optical tweezers,” Optics Letters, Vol. 40, Issue 8, pp. 1881-1884, 2015 [View].
J39. P. Girshovitz and N. T. Shaked, “Fast phase processing in off-axis holography using multiplexing with complex encoding and live-cell fluctuation map calculation in real-time,” Optics Express, Vol. 23, Issue 7, pp. 8773-8787, 2015 [View].

2014

J38. N. Turko, I. Barnea, O. Blum, R. Korenstein, and N. T. Shaked, “Detection and controlled depletion of cancer cells using photothermal phase microscopy,” Journal of Biophotonics, Vol. 8, Issue 9, pp. 755-763, 2015. Early-view version is available online from November 2014 [Link].
J37.
P. Girshovitz and N. T. Shaked, “Real-time quantitative phase reconstruction in off-axis digital holography using multiplexing,” Optics Letters, Vol. 39, No. 8, 2262-2265, 2014 [PDF, Media 1] [Link].
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Selected for re-publication in the Virtual Journal for Biomedical Optics, Vol. 9, Issue 6, 2014 [Link].
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Selected for image of the week of the Optical Society of America, April 14, 2014 [JPG].
J36.
N. Shoham, P. Girshovitz, R. Katzengold, N. T. Shaked, D. Benayahu, A. Gefen, “Adipocyte stiffness increases with accumulation of lipid droplets,”  Biophysical Journal, Vol. 106, pp. 1421-1431, 2014  [PDFMovie 1Movie 2] [Link].
J35.
I. Frenklach, P. Girshovitz, and N. T. Shaked, “Off-axis interferometric phase microscopy with tripled imaging area,”  Optics Letters , Vol. 39, No. 6, pp. 1525-1528, 2014 [PDF] [Link].
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Selected for re-publication in the Virtual Journal for Biomedical Optics, Vol. 9, Issue 5, 2014 [Link].
J34.
P. Girshovitz and N. T. Shaked, “Doubling the field of view in off-axis low-coherence interferometric imaging,” Nature – Light: Science and Applications (Nature LSA), Vol. 3, e151, pp. 1-9, 2014 [PDF, Video 1, Video 2] [Link].

2013

J33.
H. Gabai and N. T. Shaked, “Continuous wide-field characterization of drug release from skin substitute using off-axis interferometry,” Optics Letters, Vol. 38, No. 16, pp. 3017-3020, 2013 [PDF] [Link].
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Selected for re-publication in the Virtual Journal for Biomedical Optics, Vol. 8, Issue 9, 2013 [Link].
J32.
N. A. Turko, A. Peled, and N. T. Shaked, “Wide-field interferometric phase microscopy with molecular specificity using plasmonic nanoparticles,” Journal of Biomedical Optics, Vol. 18, No. 11, 111414:1-8, 2013 [PDF] [Link].
J31.
Y. Bishitz, H. Gabai, P. Girshovitz, and N. T. Shaked, “Optical-mechanical signatures of cancer cells based on fluctuation profiles measured by interferometry,” Journal of Biophotonics, Volume 7, Issue 8, Pages 624-630, 2014. Published online in 2013 [Link].
J30.
P. Girshovitz and N. T. Shaked, “Compact and portable low-coherence interferometer with off-axis geometry for quantitative phase microscopy and nanoscopy,” Optics Express, Vol. 21, Issue 5, pp. 5701-5714, 2013 [PDF] [Video] [Link].
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Selected for re-publication in the Virtual Journal for Biomedical Optics, Vol. 8, Issue 4, 2013 [Link].

2012

J29.
H. Gabai and N. T. Shaked, “Dual-channel low-coherence interferometry and its application to quantitative phase imaging of fingerprints,” Optics Express, Vol. 20, Issue 24, pp. 26906-26912, 2012 [PDF] [Link].
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Press Release in the Laser Focus World, November 13, 2013 [Link].
J28.
P. Girshovitz and N. T. Shaked, “Generalized cell morphological parameters based on interferometric phase microscopy and their application to cell life cycle characterization,” Biomedical Optics Express, Vol. 3, No. 8, pp. 1757-1773, 2012 [PDF, Media 1] [Link].
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Selected for the journal cover page on August 1, 2012 [PDF] [Video].
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Selected for image of the week of the Optical Society of America, August 6, 2012 [JPG].
- Press release in Biophotonics, by Valerie C. Coffey, October 2012 [PDF] [Link].
J27.
N. T. Shaked, “Quantitative phase microscopy of biological samples using a portable interferometer,” Optics Letters Vol. 37, No. 11, 2016-2019, 2012 [PDF] [Link].
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Selected for re-publication in the Virtual Journal for Bioemdical Optics, Vol. 7, Issue 8, 2012 [Link].
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Among the OSA Top-Downloaded Articles in holography [JPG].
J26.
I. Shock, A. Barbul, P. Girshovitz, U. Nevo, R. Korenstein, and N. T. Shaked, “Optical phase measurements in red blood cells using low-coherence spectroscopy,” Journal of Biomedical Optics, Vol. 17, No. 10, 101509:1-5, 2012 [PDF] [Link].

2011

J25.
N. T. Shaked, L. L. Satterwhite, G. A. Truskey, M. J. Telen, and A. Wax, “Quantitative microscopy and nanoscopy of sickle red blood cells performed by wide field digital interferometry,” Journal of Biomedical Optics Letters, Vol. 16, No. 3, 030506:1-3, 2011 [PDF, Video 1, Video 2] [Link].
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Selected for re-publication in the Virtual Journal of Biological Physics Research, Vol. 21, Issue 7, 2011 [Link].
J24.
Y. Zhu, N. T. Shaked, L. L. Satterwhite, and A. Wax, “Spectral-domain differential interference microscopy,” Optics Letters, Vol. 36, Issue 4, pp. 430-432, 2011 [PDF] [Link].
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Selected for re-publication in the Virtual Journal for Biomedical Optics, Vol. 6, Issue 3, 2011 [Link].

2010

J23.
M. G. Angelos, M. A. Brown, L. L. Satterwhite, V. W. Levering, N. T. Shaked, and G. A. Truskey, “Dynamic adhesion of umbilical cord blood endothelial progenitor cells under laminar shear stress,” Biophysical Journal, Vol. 99, Issue 11, pp. 3545-3554, 2010 [PDF] [Link].
J22.
N. T. Shaked, L. L. Satterwhite, N. Bursac, and A. Wax, “Whole-cell-analysis of live cardiomyocytes using wide-field interferometric phase microscopy,” Biomedical Optics Express, Vol. 1, Issue 2, pp. 706-719, 2010 [PDF, Media 1, Media 2, Media 3, Media 4, Media 5] [Link].
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Image of the Week, Optical Society of America (OpticsInfoBase.org), August 30, 2010 [JPG].
J21.
D. E. Tamir, N. T. Shaked, W. J. Geerts, and S. Dolev, “Parallel decomposition of combinatorial optimization problems using electro-optical vector by matrix multiplication architecture,”Journal of Supercomputing, 2010 [PDF].
J20.
M. T. Rinehart, N. T. Shaked, N. J. Jenness, R. L. Clark, and A. Wax, “Simultaneous two-wavelength quantitative phase microscopy with a color camera,” Optics Letters, Vol. 35, Issue 15, pp. 2612-2614, 2010 [PDF] [Link].
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Selected for re-publication in the Virtual Journal for Biomedical Optics, Vol. 5, Issue 12, 2009 [Link].
J19.
N. T. Shaked, Y. Zhu, N. Badie, N. Bursac, and A. Wax, “Reflective interferometric chamber for quantitative phase imaging of biological sample dynamics,” Journal of Biomedical Optics Letters, Vol. 15, 030503, 2010 [PDF, Video 1, Video 2] [Link].
- Selected for re-publication in the Virtual Journal of Biological Physics Research, Vol. 19, Issue 12, 2010 [Link].
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Selected for re-publication in SPIE Letters Virtual Journal, 2010 [Link].
J18.
N. T. Shaked, T. M. Newpher, M. D. Ehlers, and A. Wax, “Parallel on-axis holographic phase microscopy of biological cells and unicellular microorganism dynamics,” Applied Optics, Vol. 49, Issue 15, pp. 2872-2878, 2010 [PDF, Media 1, Media 2] [Link].
J17.
N. T. Shaked, J. D. Finan, F. Guilak, and A. Wax, “Quantitative phase microscopy of articular chondrocyte dynamics by wide-field digital interferometry,” Journal of Biomedical Optics Letters, Vol. 15, Issue 1, 010505, 2010 [PDF, Video1, Video 2] [Link].
- Among the Top-10-Downloaded Papers of SPIE on Biomedical Optics and Medical Imaging [JPG].
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Selected for re-publication in the Virtual Journal of Biological Physics Research, Vol. 19, Issue 3, 2010 [Link].
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Selected for re-publication in SPIE Letters Virtual Journal, 2010 [Link].

2009

J16.
N. T. Shaked, Y. Zhu, M. T. Rinehart, and A. Wax, “Two-step-only phase-shifting interferometry with optimized detector bandwidth for microscopy of live cells,” Optics Express, Vol. 17, Issue 18, pp. 15585-15591, 2009 [PDF] [Link].
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Selected for re-publication in the Virtual Journal for Biomedical Optics, Vol. 4, Issue 10, 2009 [Link].
J15.
[Invited] N. T. Shaked, B. Katz, and J. Rosen, “Review of three-dimensional imaging by multiple-viewpoint-projection based methods,” Applied Optics, Vol. 48, Issue 34, pp. H120-H136, 2009 [PDF] [Link].
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Monthly Top-Downloaded Paper of Applied Optics [JPG] and of all subscription journals of the Optical Society of America [JPG] for October 2009-now [JPG, JPG] (More than 2.5 years after publication date).
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Image of the Week, Optical Society of America (OpticsInfoBase.org), October 19, 2009 [JPG].
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Selected for publication in Optical Society of America Spotlight, October 8, 2009 [Link].
- Selected for re-publication in Advances in Optics and Photonics, Vol. 1, Issue 3, 2009 [Link].
- Selected for re-publication in the Virtual Journal for Biomedical Optics, Vol. 5, Issue 1, 2010 [Link].
- Editor’s picks on holography, March 2012 [JPG].
J14.
D. E. Tamir, N. T. Shaked, P. J. Wilson, and S. Dolev, “High-speed and low-power electro-optical DSP-coprocessor,” Journal of Optical Society of America A (JOSA A), Vol. 26, pp. A11-A20, 2009 [PDF] [Link].
J13.
N. T. Shaked, M. T. Rinehart, and A. Wax, “Dual interference channel quantitative phase microscopy of live cell dynamics,” Optics Letters, Vol. 34, Issue 6, pp. 767-769, 2009 [PDF, Media 1, Media 2] [Link].
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Optics Letters Top Downloaded Paper for March 2009 [JPG].
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Image of the Week, Optical Society of America (OpticsInfoBase.org), March 9, 2009 [PDF].
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Selection of the Editor-in-Chief for re-publication in the Virtual Journal for Biomedical Optics, Vol. 4, Issue 5, 2009 [Link].
J12.
N. T. Shaked, Y. Yitzhaky, and J. Rosen, “Incoherent holographic imaging through thin turbulent media,” Optics Communications, Vol. 282, pp. 1546-1550, 2009 [PDF] [Link].
J11.
[Invited] J. Rosen, G. Brooker, G. Indebetouw, and N. T. Shaked, “A review of incoherent digital Fresnel holography,” Journal of Holography and Speckle, Vol. 5, No. 2, 2009 [PDF] [Link].

2008

J10.
N. T. Shaked, G. Segev, and J. Rosen, “Three-dimensional object recognition using a quasi-correlator invariant to imaging distances,” Optics Express, Vol. 16, Issue 22, pp. 17148-17153, 2008 [PDF] [Link].
J9.
N. T. Shaked and J. Rosen, “Multiple-viewpoint projection holograms synthesized by spatially-incoherent correlation with broadband functions,” Journal of Optical Society of America A (JOSA A), Vol. 25, Issue 8, pp. 2129-2138, 2008 [PDF] [Link].
J8.
N. T. Shaked, B. Katz, and J. Rosen, “Fluorescence multicolor hologram recorded by using a macrolens array,” Optics Letters, Vol. 33, Issue 13, pp. 1461-1463, 2008 [PDF] [Link].
J7.
N. T. Shaked and J. Rosen, “Modified Fresnel computer generated hologram directly recorded by multiple viewpoint projections,” Applied Optics – Special Issue on Digital Holography, Vol. 47, Issue 19, pp. D21-D27, 2008 [PDF] [Link].

2007

J6.
B. Katz, N. T. Shaked, and J. Rosen, “Synthesizing computer generated holograms with reduced number of perspective projections,” Optics Express, Vol. 15, Issue 20, pp. 13250-13255, 2007 [PDF] [Link].
J5.
N. T. Shaked, J. Rosen and A. Stern, “Integral holography: white-light single-shot hologram acquisition,” Optics Express, Vol. 15, Issue 9, pp. 5754-5760, 2007 [PDF] [Link].
J4.
N. T. Shaked, G. Simon, T. Tabib, S. Messika, S. Dolev, and J. Rosen, “Optical binary matrix synthesis for solving bounded NP-complete combinatorial problems,” Optical Engineering, Vol. 46, Issue 10, pp. 108201: 1-11, 2007 [PDF] [Link].
J3.
N. T. Shaked, S. Messika, S. Dolev, and J. Rosen, “Optical solution for bounded NP-complete problems,” Applied Optics, Vol. 46, Issue 5, pp. 711-724, 2007 [PDF] [Link].
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Review on the subject in ABG – Ben Gurion University Newspaper (in Hebrew), Vol. 50, 2007 [PDF].

2006

J2.
N. T. Shaked and R. Rabinovici, “Structural switched reluctance motor optimization using the genetic algorithms,” Journal of Electrical Engineering, Vol. 6, No. 4, 2006 [Link].

2005

J1.
N. T. Shaked and R. Rabinovici, “New procedures for minimizing the torque ripple in switched reluctance motors by optimizing the phase-current profile,” IEEE Trans. on Magnetics, Vol. 41, No. 3, pp. 1184-1192, March 2005 [Link].

 


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